Yes. StagingPro keeps the structure of the data together in such a way that relationships between objects are maintained even though the indexes in the actual store change.
StagingPro is essentially creating an additional store within BigCommerce and recreating the original environments data into that new store. Because these are ‘new’ items as far as the new store is concerned BigCommerce will change the indexes however StagingPro identifies these new indexes and ensure that all data is put back in the right place.